Presence of opportunistic oil-degrading microorganisms operating at the initial steps of oil extraction and handling.

Hydrocarbon-degrading microorganisms from natural environments have been isolated and identified using culture-dependent or molecular techniques. However, there has been little research into the occurrence of microorganisms incorporated into crude oil in the initial steps of extraction and handling, which can reduce the quality of stored petroleum. In the present study, a packed-column reactor filled with autoclaved perlite soaked with crude oil was subjected to a continuous flow of sterile medium in order to determine the presence of potential hydrocarbon degraders. Microorganisms developed on the surface of the perlite within a period of 73 days. DNA was extracted from the biofilm and then PCR-amplified using 16S rRNA bacterial and archaeal primers and 18S rRNA eukaryotic primers. No amplification was obtained using archaeal primers. However, denaturing gradient gel electrophoresis (DGGE) revealed the presence of unique bands indicating bacterial and eukaryotic amplification. Excision of these bands, sequencing, and subsequent BLAST search showed that they corresponded to Bacillus sp. and Aspergillus versicolor. The fungus was later isolated from intact perlite in agar plates. A bacterial clone library was used to confirm the presence in the biofilm of a unique hydrocarbon-degrading bacterium closely related to Bacillus sp. Analysis of the petroleum components by gas chromatography showed that there n-alkanes, aromatic hydrocarbons, and carbazoles were degraded.     

Microbial mats on the Orkney Islands revisited: microenvironment and microbial community composition

The microenvironment and community composition of microbial mats developing on beaches in Scapa Flow (Orkney Islands) were investigated. Analysis of characteristic biomarkers (major fatty acids, hydrocarbons, alcohols, and alkenones) revealed the presence of different groups of bacteria and microalgae in mats from Waulkmill and Swanbister beach, including diatoms, Haptophyceae, cyanobacteria, and sulfate-reducing bacteria. These analyses also indicated the presence of methanogens, especially in Swanbister beach mats, and therefore a possible role of methanogenesis for the carbon cycle of these sediments. High amounts of algal lipids and slightly higher numbers (genera, abundances) of cyanobacteria were found in Waulkmill Bay mats. However, overall only a few genera and low numbers of unicellular and filamentous cyanobacteria were present in mats from Waulkmill and Swanbister beach, as deduced from CLSM (confocal laser scanning microscopy) analysis. Spectral scalar irradiance measurements with fiber-optic microprobes indicated a pronounced heterogeneity concerning zonation and density of mainly anoxygenic phototrophs in Swanbister Bay mats. By microsensor and T-RFLP (terminal restriction fragment length polymorphism) analysis in Swanbister beach mats, the depth distribution of different populations of purple and sulfate-reducing bacteria could be related to the microenvironmental conditions. Oxygen, but also sulfide and other (inorganic and organic) sulfur compounds, seems to play an important role in the stratification and diversity of these two major bacterial groups involved in sulfur cycling in Swanbister beach mats.     

Effects of mute swan grazing on a keystone macrophyte

1. This study describes the early summer foraging behaviour of mute swans (Cygnus olor) on the River Frome, a highly productive chalk stream in southern England in which Ranunculus penicillatus pseudofluitans is the dominant macrophyte. 2. A daily maximum of 41 ± 2.5 swans were present along the 1.1 km study reach during the study period (late May to the end of June). The river was the primary feeding habitat. Feeding activity on the river at dawn and dusk was much lower than during daylight, but we cannot rule out the possibility that swans fed during the hours of darkness. 3. The effects of herbivory on R. pseudofluitans biomass and morphology were quantified. Biomass was lower in grazed areas and swans grazed selectively on leaves in preference to stems. A lower proportion of stems from grazed areas possessed intact stem apices and flowering of the plant was reduced in grazed areas. 4. A model, based on the swans’ daily consumption, was used to predict the grazing pressure of swans on R. pseudofluitans. The model accurately predicted the number of bird days supported by the study site, only if grazing was assumed to severely reduce R. pseudofluitans growth. The proportion of the initial R. pseudofluitans biomass consumed by a fixed number of swans was predicted to be greater when the habitat area was smaller, initial R. pseudofluitans biomass was lower and R. pseudofluitans was of lower food value. 5. We concluded that the flux of N and P through the study reach was largely unaffected by swan activity. The quality of R. pseudofluitans mesohabitat (the plant as habitat for invertebrates and fish) was significantly reduced by grazing which also indirectly contributed to reduced roughness (Manning's n) and by inference water depth. Wetted habitat area for fish and invertebrates would also be lowered over the summer period as a consequence of the reduction in water depth. It was estimated that, while grazing, an individual swan may eat the same mass of invertebrates per day as a 300‐g trout. 6. There is a need to manage the conflict between mute swans and the keystone macrophyte, R. pseudofluitans, in chalk streams, and the modelling approach used here offers a potentially useful tool for this purpose.     

大麝鼩韩国种群与俄罗斯远东种群之间的遗传分化:基于线粒体Cyt b 基因的分析

为重新分析韩国大麝鼩种群与相邻的俄罗斯远东种群之间的遗传分化情况,我们获得9 条来自韩国4 个地点和俄罗斯3 个地点的大麝鼩线粒体细胞色素b 基因(Cyt b)全序列,并将其与来自GenBank 的4 条Cyt b 全序列和4 条Cyt b 部分序列进行比较。结果发现韩国的大麝鼩并非只有一种基因型,因此,在利用Cyt b 部分序列进行种群遗传学分析时需格外注意。基于Cyt b 全序列分析,发现韩国的大麝鼩与俄罗斯远东地区的大麝鼩之间存在1.08% 的平均JC 距离和7 个位点的差异,推测韩国的大麝鼩与俄罗斯远东地区的大麝鼩在包括末次冰盛期在内的很长时期都没有进行过遗传交流。目前的测序结果不支持当前认为大麝鼩为单系群的亚种分类理论,支持韩国大麝鼩是C. l. thomasi 亚种的分类理论,但还需进一步对中国东北地区的样品进行测序分析后才能最终确认。     

Potential for carbon sequestration in European soils: preliminary estimates for five scenarios using results from long-term experiments

One of the main options for carbon mitigation identified by the IPCC is the sequestration of carbon in soils. In this paper we use statistical relationships derived from European long-term experiments to explore the potential for carbon sequestration in soils in the European Union. We examine five scenarios, namely (a) the amendment of arable soils with animal manure, (b) the amendment of arable soils with sewage sludge, (c) the incorporation of cereal straw into the soils in which it was grown, (d) the afforestation of surplus arable land through natural woodland regeneration, and (e) extensification of agriculture through ley-arable farming. Our calculations suggest only limited potential to increase soil carbon stocks over the next century by addition of animal manure, sewage sludge or straw (Þbl 15 Tg C y^–1), but greater potential through extensification of agriculture (≈ 40 Tg C y^–1) or through the afforestation of surplus arable land (≈ 50 Tg C y^–1). We estimate that extensification could increase the total soil carbon stock of the European Union by 17%. Afforestation of 30% of present arable land would increase soil carbon stocks by about 8% over a century and would substitute up to 30 Tg C y^–1 of fossil fuel carbon if the wood were used as biofuel. However, even the afforestation scenario, with the greatest potential for carbon mitigation, can sequester only 0.8% of annual global anthropogenic CO₂-carbon. Our figures suggest that, although efforts in temperate agriculture can contribute to global carbon mitigation, the potential is small compared to that available through reducing anthropogenic CO₂ emissions by halting tropical and sub-tropical deforestation or by reducing fossil fuel burning.     

The land–atmosphere water flux in the tropics

Tropical vegetation is a major source of global land surface evapotranspiration, and can thus play a major role in global hydrological cycles and global atmospheric circulation. Accurate prediction of tropical evapotranspiration is critical to our understanding of these processes under changing climate. We examined the controls on evapotranspiration in tropical vegetation at 21 pan-tropical eddy covariance sites, conducted a comprehensive and systematic evaluation of 13 evapotranspiration models at these sites, and assessed the ability to scale up model estimates of evapotranspiration for the test region of Amazonia. Net radiation was the strongest determinant of evapotranspiration (mean evaporative fraction was 0.72) and explained 87% of the variance in monthly evapotranspiration across the sites. Vapor pressure deficit was the strongest residual predictor (14%), followed by normalized difference vegetation index (9%), precipitation (6%) and wind speed (4%). The radiation-based evapotranspiration models performed best overall for three reasons: (1) the vegetation was largely decoupled from atmospheric turbulent transfer (calculated from Ω decoupling factor), especially at the wetter sites; (2) the resistance-based models were hindered by difficulty in consistently characterizing canopy (and stomatal) resistance in the highly diverse vegetation; (3) the temperature-based models inadequately captured the variability in tropical evapotranspiration. We evaluated the potential to predict regional evapotranspiration for one test region: Amazonia. We estimated an Amazonia-wide evapotranspiration of 1370 mm yr⁻¹, but this value is dependent on assumptions about energy balance closure for the tropical eddy covariance sites; a lower value (1096 mm yr⁻¹) is considered in discussion on the use of flux data to validate and interpolate models.     

Acid treatment effects on the stable isotopic signatures of fossils

Abstract: Prior to geochemical analyses, fossil bones and teeth are often extracted from any surrounding lithified sediments using chemical techniques such as immersion in acid. As stable isotope analysis becomes more commonplace in palaeoecological investigations, it is important to consider what effects these chemical preparation techniques may have on any subsequent isotopic data and to constrain these effects as quantitatively as possible. This study aims to elucidate these effects, as it is vital that variability in a data set should not be introduced as a result of protocols used during sample preparation; in addition, it defines the most effective and viable method of carbonate removal for processing bulk fossil samples without causing alteration of their stable isotopic signatures. Various strengths of two weak acids commonly used during palaeontological preparation were tested to evaluate their effects on the δ¹⁵N and δ¹³C_org isotopic signatures of the vertebrae of a large Eocene fossil fish. Changes in the isotopic values occurred over time regardless of which acid was used, each causing a variable response in both δ¹⁵N and δ¹³C_org isotopic values. Without careful monitoring of the acidification process in a controlled environment, any resulting data could therefore confound interpretation. Based on these experiments, it is recommended that 2 m acetic acid be used for the pretreatment of fossils prior to the acquisition of N and C isotope data where carbonate removal is necessary.     

Does seed germination contribute to ecological breadth and geographic range? A test with sympatric Diplusodon (Lythraceae) species from rupestrian fields

We tested the regeneration niche hypothesis by comparing the germination ecology of two sympatric Diplusodon species differing in their geographic range and microhabitat. Diplusodon orbicularis is an endemic shrub achieving high densities on sandy soils, whereas Diplusodon hirsutus has a wider geographic range and establishes on rocky outcrops. Seeds were set to germinate under constant temperatures of 15, 20, 25, 30 and 35°C under 12 h light/12 h dark conditions. Light induced germination in both species, but germination under darkness was also observed. Optimum conditions for germination were 25°C/light for both species. The lack of differences in soil temperatures between rocky outcrops and sandy soils provides evidence of no temperature‐dependent microhabitat selection. Unexpectedly, germinability of the more widespread species was lower than that of the endemic congener. Higher germinability of D. orbicularis may account for higher densities when compared with D. hirsutus. Our results provide limited support for the role of germination in contributing to ecological breadth and geographic range.